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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10842-RA through 18771 annotations produced 1 hits



Cytochrome P450-4p1 (Cyp4p1):

Annotation Number : CG10842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015037
Gbrowse : chr2R:5127547-5129642 (+) // 100.0 //
Probeset : 1638053_at
Accessions : protein= NP_524828;, nucleotide= NM_080089;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015037.
Homophila reports that CG10842 is a close match (2e-11) to human gene CYP11B2 (NP_000489), a gene associated with Aldosterone to renin ratio raised (3);Hypoaldosteronism, congenital, due to CMO I deficiency, 203400 (3);Hypoaldosteronism, congenital, due to CMO II deficiency, 610600 (3);{Low renin hypertension, susceptibility to} (3).
BioGrid reports that CG10842 interacts with CG7387 .
VDRC has 2 RNAi stocks for FBgn0015037 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 33 of 4 0.10Down
Head1223 504 of 4 2.90Up
Eye951 544 of 4 2.29Up
Thoracicoabdominal ganglion25 44 of 4 0.10Down
Salivary gland55 44 of 4 0.13Down
Crop128 44 of 4 0.30Down
Midgut1671 714 of 4 4.00Up
Tubule3362 4764 of 4 8.10Up
Hindgut1384 294 of 4 3.30Up
Heart609 104 of 4 1.47Up
Fat body1374 1354 of 4 3.30Up
Ovary4 11 of 4 0.00Down
Testis105 54 of 4 0.30Down
Male accessory glands255 304 of 4 0.60Down
Virgin spermatheca856 524 of 4 2.06Up
Mated spermatheca902 374 of 4 2.17Up
Adult carcass961 864 of 4 2.30Up
Larval CNS7 30 of 4 0.02Down
Larval Salivary gland21 14 of 4 0.05Down
Larval midgut1315 604 of 4 3.16Up
Larval tubule1746 364 of 4 4.20Up
Larval hindgut850 404 of 4 2.04Up
Larval fat body1199 1254 of 4 2.90Up
Larval trachea36 244 of 4 0.09Down
Larval carcass203 134 of 4 0.49Down
S2 cells (growing)27 14 of 4 0.07Down
Whole fly416 224 of 4

Looking for CG10842-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime