FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10843-RA through 18771 annotations produced 1 hits

Cyp4p3 (Cyp4p3):

Annotation Number : CG10843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033397
Gbrowse : chr2R:5129845-5131915 (+) // 100.0 //
Probeset : 1634731_at
Accessions : protein= NP_610473;, nucleotide= NM_136629;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033397.
BDGP gene expression has embryonic in situ data for Cyp4p3: 2 pix of staining in 1 body parts.
Homophila reports that CG10843 is a close match (2e-11) to human gene CYP11B1;FHI;P450C11 (NP_000488), a gene associated with Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency, 202010 (3);Aldosteronism, glucocorticoid-remediable, 103900 (3).
VDRC has 3 RNAi stocks for FBgn0033397 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	41 ± 1	4 of 4	0.60	Down
Eye	100 ± 3	4 of 4	1.47	Up
Thoracicoabdominal ganglion	1 ± 1	0 of 4	0.00	Down
Salivary gland	8 ± 3	0 of 4	0.12	Down
Crop	49 ± 4	4 of 4	0.70	Down
Midgut	4 ± 2	0 of 4	0.10	Down
Tubule	1264 ± 441	4 of 4	18.60	Up
Hindgut	35 ± 3	3 of 4	0.50	Down
Heart	35 ± 3	4 of 4	0.53	Down
Fat body	110 ± 6	4 of 4	1.63	Up
Ovary	5 ± 1	0 of 4	0.10	Down
Testis	106 ± 2	4 of 4	1.60	Up
Male accessory glands	5559 ± 195	4 of 4	81.60	Up
Virgin spermatheca	114 ± 7	4 of 4	1.67	Up
Mated spermatheca	164 ± 14	4 of 4	2.41	Up
Adult carcass	50 ± 2	3 of 4	0.70	Down
Larval CNS	1 ± 2	0 of 4	0.03	Down
Larval Salivary gland	2 ± 1	0 of 4	0.04	Down
Larval midgut	25 ± 1	0 of 4	0.37	Down
Larval tubule	496 ± 23	4 of 4	7.30	Up
Larval hindgut	68 ± 3	4 of 4	1.00	None
Larval fat body	27 ± 9	1 of 4	0.40	Down
Larval trachea	14 ± 6	3 of 4	0.22	Down
Larval carcass	60 ± 8	4 of 4	0.89	None
S2 cells (growing)	10 ± 1	1 of 4	0.15	Down
Whole fly	68 ± 5	4 of 4

Looking for CG10843-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720