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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10846-RA through 18771 annotations produced 1 hits



"dynactin ( p25 subunit"):

Annotation Number : CG10846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:15005742-15006614 (+) // 100.0 //
Probeset : 1623231_at
Accessions : protein= , nucleotide= NP_609734; /// NP_723893;
Pathway : 0007018 // microtubule-based movement // inferred from sequence or structural similarity
Interpro : 0005869 // dynactin complex // inferred from sequence or structural similarity /// 0005869 // dynactin complex // non-tr
FlyMine data for full length.
BioGrid reports that CG10846 interacts with CG13081 CG17347 CG17652 CG3203 CG11248 CG12297 CG12799 CG31958 CG4832 CG5820 CG6824 CG8206 CG8359 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 64 of 4 1.50Up
Head118 84 of 4 1.10None
Eye171 104 of 4 1.56Up
Thoracicoabdominal ganglion162 64 of 4 1.50Up
Salivary gland197 104 of 4 1.79Up
Crop160 24 of 4 1.50Up
Midgut174 44 of 4 1.60Up
Tubule104 34 of 4 1.00None
Hindgut203 54 of 4 1.90Up
Heart106 24 of 4 0.97None
Fat body89 74 of 4 0.81Down
Ovary115 24 of 4 1.10None
Testis97 34 of 4 0.90None
Male accessory glands109 54 of 4 1.00None
Virgin spermatheca96 34 of 4 0.88None
Mated spermatheca123 104 of 4 1.12None
Adult carcass96 84 of 4 0.90None
Larval CNS158 204 of 4 1.44Up
Larval Salivary gland226 74 of 4 2.07Up
Larval midgut158 34 of 4 1.45Up
Larval tubule221 74 of 4 2.00Up
Larval hindgut164 64 of 4 1.50Up
Larval fat body99 24 of 4 0.90None
Larval trachea248 64 of 4 2.26Up
Larval carcass189 114 of 4 1.73Up
S2 cells (growing)152 24 of 4 1.39Up
Whole fly109 44 of 4

Looking for CG10846-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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