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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10852-RA through 18771 annotations produced 1 hits

Accessory gland protein 63F (Acp63F):

Annotation Number : CG10852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015585
Gbrowse : chr3L:3815922-3816354 (-) // 100.0 //
Probeset : 1634882_at
Accessions : protein= NP_523906;, nucleotide= NM_079182;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0015585.
BioGrid reports that CG10852 interacts with CG15631 CG17667 .
VDRC has 3 RNAi stocks for FBgn0015585 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head4 11 of 4 0.00Down
Eye2 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland1 00 of 4 0.00Down
Crop3 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart7 14 of 4 0.01Down
Fat body18 44 of 4 0.02Down
Ovary7 61 of 4 0.00Down
Testis92 474 of 4 0.10Down
Male accessory glands9396 2294 of 4 8.80Up
Virgin spermatheca30 44 of 4 0.03Down
Mated spermatheca16 14 of 4 0.01Down
Adult carcass101 354 of 4 0.10Down
Larval CNS0 10 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut4 02 of 4 0.00Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut2 02 of 4 0.00Down
Larval fat body58 84 of 4 0.10Down
Larval trachea2 10 of 4 0.00Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly1072 1224 of 4

Looking for CG10852-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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