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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10853-RA through 18771 annotations produced 1 hits



(CG10853):

Annotation Number : CG10853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035478
Gbrowse : chr3L:3947911-3948685 (+) // 100.0 //
Probeset : 1629631_at
Accessions : protein= NP_647842;, nucleotide= NM_139585;
FlyMine data for FBgn0035478.
BDGP gene expression has embryonic in situ data for CG10853: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.80None
Head5 ± 10 of 4 0.70None
Eye3 ± 10 of 4 0.51None
Thoracicoabdominal ganglion7 ± 00 of 4 1.00None
Salivary gland19 ± 51 of 4 2.49None
Crop5 ± 11 of 4 0.80None
Midgut17 ± 43 of 4 2.20None
Tubule8 ± 01 of 4 1.10None
Hindgut9 ± 01 of 4 1.20None
Heart6 ± 11 of 4 0.80None
Fat body14 ± 30 of 4 1.91Up
Ovary5 ± 10 of 4 0.70None
Testis4 ± 01 of 4 0.60None
Male accessory glands14 ± 20 of 4 1.90None
Virgin spermatheca10 ± 23 of 4 1.40None
Mated spermatheca8 ± 11 of 4 1.09None
Adult carcass15 ± 40 of 4 2.00None
Larval CNS4 ± 10 of 4 0.60None
Larval Salivary gland5 ± 10 of 4 0.76None
Larval midgut16 ± 12 of 4 2.15Up
Larval tubule8 ± 12 of 4 1.10None
Larval hindgut7 ± 02 of 4 0.99None
Larval fat body6 ± 20 of 4 0.80None
Larval trachea4 ± 20 of 4 0.63None
Larval carcass10 ± 11 of 4 1.33None
S2 cells (growing)9 ± 00 of 4 1.28None
Whole fly7 ± 20 of 4

Looking for CG10853-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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