FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10863-RA through 18771 annotations produced 1 hits

(CG10863):

Annotation Number : CG10863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027552
Gbrowse : chr3L:3941006-3942461 (-) // 100.0 //
Probeset : 1640451_at
Accessions : protein= NP_647840;, nucleotide= NM_139583;
Interpro : 0004032 // aldehyde reductase activity // inferred from sequence or structural similarity /// 0004032 // aldehyde reduct
FlyMine data for FBgn0027552.
BDGP gene expression has embryonic in situ data for BcDNA:GH10614: 10 pix of staining in 3 body parts.
Homophila reports that CG10863 is a close match (1e-64) to human gene (NP_005980), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0027552 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027552 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1169 ± 45	4 of 4	1.10	None
Head	2976 ± 116	4 of 4	2.80	Up
Eye	4910 ± 484	4 of 4	4.54	Up
Thoracicoabdominal ganglion	1349 ± 9	4 of 4	1.20	Up
Salivary gland	1198 ± 52	4 of 4	1.11	None
Crop	1583 ± 42	4 of 4	1.50	Up
Midgut	2167 ± 91	4 of 4	2.00	Up
Tubule	2684 ± 249	4 of 4	2.50	Up
Hindgut	1312 ± 20	4 of 4	1.20	Up
Heart	3045 ± 160	4 of 4	2.82	Up
Fat body	3992 ± 658	4 of 4	3.69	Up
Ovary	832 ± 7	4 of 4	0.80	Down
Testis	522 ± 8	4 of 4	0.50	Down
Male accessory glands	259 ± 19	4 of 4	0.20	Down
Virgin spermatheca	3798 ± 121	4 of 4	3.51	Up
Mated spermatheca	3208 ± 173	4 of 4	2.97	Up
Adult carcass	2932 ± 139	4 of 4	2.70	Up
Larval CNS	298 ± 50	4 of 4	0.28	Down
Larval Salivary gland	368 ± 22	4 of 4	0.34	Down
Larval midgut	1537 ± 172	4 of 4	1.42	None
Larval tubule	1023 ± 81	4 of 4	0.90	None
Larval hindgut	758 ± 53	4 of 4	0.70	Down
Larval fat body	3761 ± 376	4 of 4	3.50	Up
Larval trachea	574 ± 98	4 of 4	0.53	Down
Larval carcass	517 ± 81	4 of 4	0.48	Down
S2 cells (growing)	393 ± 9	4 of 4	0.36	Down
Whole fly	1080 ± 28	4 of 4

Looking for CG10863-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720