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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10868-RA through 18771 annotations produced 1 hits


oo18 RNA-binding protein (orb):

Annotation Number : CG10868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004882
Gbrowse : chr3R:19090363-19106571 (-) // 100.0 //
Probeset : 1635846_a_at
Accessions : protein= NP_001163699; /// NP_524460; /// NP_732848; /// NP_732849; /// NP_732850; /// NP_732851;, nucleotide= NM_001170228; /// NM_079736; /// NM_170062; /// NM_170063; /// NM_170064; /// NM_170065;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0004882.
BioGrid reports that CG10868 interacts with CG1821 CG9854 CG5654 CG31762 .
TRiP has 1 RNAi stocks for FBgn0004882 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004882 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 04 of 4 0.10Down
Head4 ± 11 of 4 0.00Down
Eye3 ± 01 of 4 0.01Down
Thoracicoabdominal ganglion10 ± 24 of 4 0.00Down
Salivary gland23 ± 33 of 4 0.08Down
Crop5 ± 02 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule16 ± 101 of 4 0.10Down
Hindgut2 ± 01 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body73 ± 424 of 4 0.26Down
Ovary832 ± 124 of 4 2.90Up
Testis6 ± 14 of 4 0.00Down
Male accessory glands7 ± 21 of 4 0.00Down
Virgin spermatheca14 ± 14 of 4 0.05Down
Mated spermatheca7 ± 23 of 4 0.03Down
Adult carcass24 ± 114 of 4 0.10Down
Larval CNS22 ± 24 of 4 0.08Down
Larval Salivary gland14 ± 24 of 4 0.05Down
Larval midgut4 ± 13 of 4 0.01Down
Larval tubule5 ± 02 of 4 0.00Down
Larval hindgut5 ± 13 of 4 0.02Down
Larval fat body7 ± 10 of 4 0.00Down
Larval trachea3 ± 11 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly288 ± 274 of 4

Looking for CG10868-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime