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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10869-RA through 18771 annotations produced 1 hits


(CG10869):

Annotation Number : CG10869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031347
Gbrowse : chr2L:1584857-1587270 (-) // 100.0 //
Probeset : 1624835_at
Accessions : protein= NP_001097049; /// NP_608605;, nucleotide= NM_001103579; /// NM_134761;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031347.
BioGrid reports that CG10869 interacts with CG14724 CG9986 .
VDRC has 2 RNAi stocks for FBgn0031347 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.02Down
Crop7 ± 10 of 4 0.00Down
Midgut9 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.00Down
Heart4 ± 00 of 4 0.03Down
Fat body3 ± 10 of 4 0.02Down
Ovary4 ± 00 of 4 0.00Down
Testis1756 ± 384 of 411.60Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.03Down
Mated spermatheca3 ± 00 of 4 0.02Down
Adult carcass14 ± 50 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland6 ± 10 of 4 0.04Down
Larval midgut6 ± 10 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body236 ± 1394 of 4 1.60None
Larval trachea7 ± 61 of 4 0.05Down
Larval carcass3 ± 00 of 4 0.02Down
S2 cells (growing)8 ± 00 of 4 0.06Down
Whole fly151 ± 74 of 4

Looking for CG10869-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime