FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10880-RA through 18771 annotations produced 1 hits

(CG10880):

Annotation Number : CG10880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031398
Gbrowse : chr2L:2214971-2216298 (-) // 100.0 //
Probeset : 1639589_at
Accessions : protein= NP_608655;, nucleotide= NM_134811;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031398.
BDGP gene expression has embryonic in situ data for CG10880: 10 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0031398 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	39 ± 0	4 of 4	0.70	Down
Head	19 ± 1	4 of 4	0.40	Down
Eye	15 ± 1	3 of 4	0.29	Down
Thoracicoabdominal ganglion	33 ± 1	4 of 4	0.60	Down
Salivary gland	16 ± 5	1 of 4	0.30	Down
Crop	16 ± 1	1 of 4	0.30	Down
Midgut	21 ± 2	0 of 4	0.40	Down
Tubule	25 ± 0	3 of 4	0.50	Down
Hindgut	11 ± 1	0 of 4	0.20	Down
Heart	14 ± 1	1 of 4	0.27	Down
Fat body	20 ± 5	2 of 4	0.37	Down
Ovary	128 ± 3	4 of 4	2.40	Up
Testis	10 ± 1	0 of 4	0.20	Down
Male accessory glands	72 ± 7	4 of 4	1.30	None
Virgin spermatheca	20 ± 3	4 of 4	0.38	Down
Mated spermatheca	21 ± 4	4 of 4	0.40	Down
Adult carcass	18 ± 2	0 of 4	0.30	Down
Larval CNS	79 ± 3	4 of 4	1.48	Up
Larval Salivary gland	27 ± 1	2 of 4	0.50	Down
Larval midgut	16 ± 3	0 of 4	0.31	Down
Larval tubule	21 ± 2	4 of 4	0.40	Down
Larval hindgut	21 ± 1	2 of 4	0.39	Down
Larval fat body	30 ± 4	3 of 4	0.60	Down
Larval trachea	37 ± 3	4 of 4	0.69	Down
Larval carcass	18 ± 1	0 of 4	0.35	Down
S2 cells (growing)	14 ± 1	1 of 4	0.26	Down
Whole fly	54 ± 2	4 of 4

Looking for CG10880-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720