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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10880-RA through 18771 annotations produced 1 hits



(CG10880):

Annotation Number : CG10880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031398
Gbrowse : chr2L:2214971-2216298 (-) // 100.0 //
Probeset : 1639589_at
Accessions : protein= NP_608655;, nucleotide= NM_134811;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031398.
BDGP gene expression has embryonic in situ data for CG10880: 10 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0031398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 04 of 4 0.70Down
Head19 14 of 4 0.40Down
Eye15 13 of 4 0.29Down
Thoracicoabdominal ganglion33 14 of 4 0.60Down
Salivary gland16 51 of 4 0.30Down
Crop16 11 of 4 0.30Down
Midgut21 20 of 4 0.40Down
Tubule25 03 of 4 0.50Down
Hindgut11 10 of 4 0.20Down
Heart14 11 of 4 0.27Down
Fat body20 52 of 4 0.37Down
Ovary128 34 of 4 2.40Up
Testis10 10 of 4 0.20Down
Male accessory glands72 74 of 4 1.30None
Virgin spermatheca20 34 of 4 0.38Down
Mated spermatheca21 44 of 4 0.40Down
Adult carcass18 20 of 4 0.30Down
Larval CNS79 34 of 4 1.48Up
Larval Salivary gland27 12 of 4 0.50Down
Larval midgut16 30 of 4 0.31Down
Larval tubule21 24 of 4 0.40Down
Larval hindgut21 12 of 4 0.39Down
Larval fat body30 43 of 4 0.60Down
Larval trachea37 34 of 4 0.69Down
Larval carcass18 10 of 4 0.35Down
S2 cells (growing)14 11 of 4 0.26Down
Whole fly54 24 of 4

Looking for CG10880-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime