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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10881-RA through 18771 annotations produced 1 hits



(CG10881):

Annotation Number : CG10881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038796
Gbrowse : chr3R:16233986-16234870 (+) // 100.0 //
Probeset : 1637215_at
Accessions : protein= NP_650887;, nucleotide= NM_142630;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 co
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0038796.
VDRC has 2 RNAi stocks for FBgn0038796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head5 ± 10 of 4 0.30Down
Eye3 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.30Down
Salivary gland17 ± 41 of 4 0.77None
Crop8 ± 10 of 4 0.40Down
Midgut9 ± 00 of 4 0.40Down
Tubule7 ± 10 of 4 0.30Down
Hindgut8 ± 20 of 4 0.40Down
Heart7 ± 10 of 4 0.32Down
Fat body8 ± 20 of 4 0.39Down
Ovary7 ± 01 of 4 0.30Down
Testis371 ± 84 of 416.80Up
Male accessory glands12 ± 20 of 4 0.50Down
Virgin spermatheca7 ± 00 of 4 0.36Down
Mated spermatheca7 ± 10 of 4 0.32Down
Adult carcass14 ± 20 of 4 0.60Down
Larval CNS5 ± 11 of 4 0.27Down
Larval Salivary gland12 ± 12 of 4 0.58Down
Larval midgut11 ± 20 of 4 0.51Down
Larval tubule7 ± 10 of 4 0.30Down
Larval hindgut7 ± 20 of 4 0.34Down
Larval fat body47 ± 192 of 4 2.10None
Larval trachea8 ± 13 of 4 0.38Down
Larval carcass10 ± 00 of 4 0.46Down
S2 cells (growing)6 ± 10 of 4 0.28Down
Whole fly22 ± 24 of 4

Looking for CG10881-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime