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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10889-RA through 18771 annotations produced 1 hits



(CG10889):

Annotation Number : CG10889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038769
Gbrowse : chr3R:15859597-15861777 (-) // 100.0 //
Probeset : 1641331_at
Accessions : protein= NP_650863;, nucleotide= NM_142606;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038769.
BioGrid reports that CG10889 interacts with CG15658 CG17051 CG2096 .
VDRC has 2 RNAi stocks for FBgn0038769 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.80Down
Head29 ± 04 of 4 0.70Down
Eye24 ± 14 of 4 0.57Down
Thoracicoabdominal ganglion46 ± 44 of 4 1.10None
Salivary gland55 ± 54 of 4 1.30None
Crop50 ± 14 of 4 1.20Up
Midgut48 ± 44 of 4 1.10None
Tubule47 ± 14 of 4 1.10Up
Hindgut45 ± 14 of 4 1.10None
Heart20 ± 04 of 4 0.49Down
Fat body33 ± 64 of 4 0.79None
Ovary82 ± 24 of 4 2.00Up
Testis24 ± 04 of 4 0.60Down
Male accessory glands33 ± 24 of 4 0.80Down
Virgin spermatheca37 ± 24 of 4 0.89None
Mated spermatheca36 ± 14 of 4 0.87Down
Adult carcass48 ± 44 of 4 1.10None
Larval CNS49 ± 34 of 4 1.18Up
Larval Salivary gland72 ± 14 of 4 1.71Up
Larval midgut45 ± 24 of 4 1.07None
Larval tubule51 ± 14 of 4 1.20Up
Larval hindgut46 ± 24 of 4 1.09None
Larval fat body39 ± 14 of 4 0.90None
Larval trachea28 ± 34 of 4 0.68Down
Larval carcass37 ± 14 of 4 0.88None
S2 cells (growing)50 ± 24 of 4 1.20Up
Whole fly42 ± 14 of 4

Looking for CG10889-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime