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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10897-RA through 18771 annotations produced 1 hits



toutatis (tou):

Annotation Number : CG10897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033636
Gbrowse : chr2R:7466386-7503336 (-) // 100.0 //
Probeset : 1640433_a_at
Accessions : protein= NP_001097270; /// NP_523701; /// NP_725062;, nucleotide= NM_001103800; /// NM_078977; /// NM_165844;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // non-traceable author s
FlyMine data for FBgn0033636.
BDGP gene expression has embryonic in situ data for tou: 15 pix of staining in 10 body parts.
BioGrid reports that CG10897 interacts with CG6843 CG32443 CG18412 .
TRiP has 2 RNAi stocks for FBgn0033636 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 64 of 4 1.90Up
Head63 ± 24 of 4 0.70Down
Eye75 ± 34 of 4 0.78None
Thoracicoabdominal ganglion125 ± 74 of 4 1.30Up
Salivary gland79 ± 34 of 4 0.82None
Crop104 ± 34 of 4 1.10None
Midgut53 ± 34 of 4 0.50Down
Tubule63 ± 14 of 4 0.70Down
Hindgut76 ± 44 of 4 0.80None
Heart52 ± 44 of 4 0.54Down
Fat body38 ± 84 of 4 0.40Down
Ovary354 ± 124 of 4 3.70Up
Testis40 ± 34 of 4 0.40Down
Male accessory glands61 ± 34 of 4 0.60Down
Virgin spermatheca67 ± 54 of 4 0.70Down
Mated spermatheca66 ± 84 of 4 0.68Down
Adult carcass44 ± 54 of 4 0.50Down
Larval CNS379 ± 334 of 4 3.91Up
Larval Salivary gland55 ± 04 of 4 0.57Down
Larval midgut66 ± 44 of 4 0.68Down
Larval tubule44 ± 34 of 4 0.50Down
Larval hindgut116 ± 64 of 4 1.20None
Larval fat body37 ± 24 of 4 0.40Down
Larval trachea155 ± 114 of 4 1.60Up
Larval carcass110 ± 104 of 4 1.14None
S2 cells (growing)261 ± 104 of 4 2.70Up
Whole fly96 ± 74 of 4

Looking for CG10897-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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