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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10903-RA through 18771 annotations produced 1 hits



(CG10903):

Annotation Number : CG10903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037543
Gbrowse : chr3R:3856550-3857867 (+) // 99.64 //
Probeset : 1633751_at
Accessions : protein= NP_649762;, nucleotide= NM_141505;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0037543.
BDGP gene expression has embryonic in situ data for CG10903: 9 pix of staining in 16 body parts.
BioGrid reports that CG10903 interacts with CG9527 .
VDRC has 2 RNAi stocks for FBgn0037543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 34 of 4 0.60Down
Head112 ± 24 of 4 0.70Down
Eye105 ± 64 of 4 0.65Down
Thoracicoabdominal ganglion122 ± 84 of 4 0.80Down
Salivary gland241 ± 194 of 4 1.49Up
Crop166 ± 44 of 4 1.00None
Midgut130 ± 44 of 4 0.80Down
Tubule176 ± 174 of 4 1.10None
Hindgut120 ± 34 of 4 0.70Down
Heart167 ± 54 of 4 1.03None
Fat body197 ± 134 of 4 1.22Up
Ovary266 ± 104 of 4 1.60Up
Testis74 ± 34 of 4 0.50Down
Male accessory glands147 ± 154 of 4 0.90None
Virgin spermatheca181 ± 144 of 4 1.12None
Mated spermatheca204 ± 204 of 4 1.26None
Adult carcass131 ± 44 of 4 0.80Down
Larval CNS214 ± 194 of 4 1.32Up
Larval Salivary gland247 ± 14 of 4 1.52Up
Larval midgut112 ± 64 of 4 0.69Down
Larval tubule120 ± 14 of 4 0.70Down
Larval hindgut130 ± 154 of 4 0.80None
Larval fat body87 ± 54 of 4 0.50Down
Larval trachea283 ± 554 of 4 1.75Up
Larval carcass147 ± 234 of 4 0.91None
S2 cells (growing)141 ± 64 of 4 0.87Down
Whole fly162 ± 24 of 4

Looking for CG10903-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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