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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10904-RA through 18771 annotations produced 1 hits



(CG10904):

Annotation Number : CG10904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034945
Gbrowse : chr2R:19856583-19857592 (-) // 100.0 //
Probeset : 1627154_at
Accessions : protein= NP_611860;, nucleotide= NM_138016;
FlyMine data for FBgn0034945.
BDGP gene expression has embryonic in situ data for CG10904: 4 pix of staining in 1 body parts.
BioGrid reports that CG10904 interacts with CG4071 CG5717 .
VDRC has 2 RNAi stocks for FBgn0034945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 44 of 4 1.30Up
Head80 14 of 4 0.80Down
Eye112 24 of 4 1.12Up
Thoracicoabdominal ganglion100 44 of 4 1.00None
Salivary gland94 44 of 4 0.93None
Crop120 64 of 4 1.20None
Midgut87 24 of 4 0.90Down
Tubule70 14 of 4 0.70Down
Hindgut78 34 of 4 0.80Down
Heart81 24 of 4 0.81Down
Fat body64 74 of 4 0.64Down
Ovary193 14 of 4 1.90Up
Testis35 14 of 4 0.40Down
Male accessory glands96 04 of 4 1.00Down
Virgin spermatheca48 44 of 4 0.49Down
Mated spermatheca54 44 of 4 0.54Down
Adult carcass63 34 of 4 0.60Down
Larval CNS146 84 of 4 1.46Up
Larval Salivary gland109 24 of 4 1.08None
Larval midgut57 24 of 4 0.57Down
Larval tubule95 44 of 4 1.00None
Larval hindgut71 54 of 4 0.71Down
Larval fat body75 104 of 4 0.80None
Larval trachea158 64 of 4 1.57Up
Larval carcass64 34 of 4 0.64Down
S2 cells (growing)53 14 of 4 0.53Down
Whole fly100 14 of 4

Looking for CG10904-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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