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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1091-RB through 18771 annotations produced 1 hits



(CG1091):

Annotation Number : CG1091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037470
Gbrowse : chr3R:2908944-2911811 (-) // 100.0 //
Probeset : 1630469_a_at
Accessions : protein= NP_649693; /// NP_731129;, nucleotide= NM_141436; /// NM_169169;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from el
FlyMine data for FBgn0037470.
BDGP gene expression has embryonic in situ data for CG1091: 13 pix of staining in 17 body parts.
BioGrid reports that CG1091 interacts with CG16725 CG2241 CG2709 CG11327 CG12204 CG12589 CG14632 CG17143 CG2275 CG32514 CG3342 CG6838 CG9772 .
TRiP has 1 RNAi stocks for FBgn0037470 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 34 of 4 0.80Down
Head149 44 of 4 0.50Down
Eye116 34 of 4 0.42Down
Thoracicoabdominal ganglion213 04 of 4 0.80Down
Salivary gland337 94 of 4 1.22Up
Crop218 14 of 4 0.80Down
Midgut184 74 of 4 0.70Down
Tubule252 34 of 4 0.90Down
Hindgut227 54 of 4 0.80Down
Heart261 54 of 4 0.94None
Fat body180 144 of 4 0.65Down
Ovary481 124 of 4 1.70Up
Testis547 64 of 4 2.00Up
Male accessory glands367 164 of 4 1.30Up
Virgin spermatheca349 94 of 4 1.26Up
Mated spermatheca312 94 of 4 1.13None
Adult carcass190 54 of 4 0.70Down
Larval CNS340 44 of 4 1.23Up
Larval Salivary gland425 124 of 4 1.54Up
Larval midgut142 64 of 4 0.51Down
Larval tubule283 64 of 4 1.00None
Larval hindgut235 24 of 4 0.85Down
Larval fat body324 164 of 4 1.20None
Larval trachea386 204 of 4 1.40Up
Larval carcass305 24 of 4 1.10None
S2 cells (growing)419 44 of 4 1.51Up
Whole fly277 124 of 4

Looking for CG1091-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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