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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1092-RA through 18771 annotations produced 1 hits


Annotation Number : CG1092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037228
Gbrowse : chr3R:92695-94166 (+) // 100.0 //
Probeset : 1638567_at
Accessions : protein= NP_649447; /// NP_730797;, nucleotide= NM_141190; /// NM_164325;
FlyMine data for FBgn0037228.
BDGP gene expression has embryonic in situ data for CG1092: 19 pix of staining in 4 body parts.
BioGrid reports that CG1092 interacts with CG8187 .
VDRC has 3 RNAi stocks for FBgn0037228 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 54 of 4 1.30None
Head311 174 of 4 7.20Up
Eye82 134 of 4 1.90None
Thoracicoabdominal ganglion23 24 of 4 0.50Down
Salivary gland20 33 of 4 0.47Down
Crop13 14 of 4 0.30Down
Midgut6 00 of 4 0.10Down
Tubule8 11 of 4 0.20Down
Hindgut5 11 of 4 0.10Down
Heart675 204 of 415.53Up
Fat body80 54 of 4 1.86Up
Ovary3 01 of 4 0.10Down
Testis90 54 of 4 2.10Up
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca69 64 of 4 1.59Up
Mated spermatheca60 84 of 4 1.39None
Adult carcass183 84 of 4 4.20Up
Larval CNS5 14 of 4 0.13Down
Larval Salivary gland12 14 of 4 0.27Down
Larval midgut10 14 of 4 0.24Down
Larval tubule11 13 of 4 0.30Down
Larval hindgut23 24 of 4 0.54Down
Larval fat body143 124 of 4 3.30Up
Larval trachea89 144 of 4 2.05Up
Larval carcass174 174 of 4 4.01Up
S2 cells (growing)2856 124 of 465.71Up
Whole fly43 14 of 4

Looking for CG1092-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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