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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10932-RA through 18771 annotations produced 1 hits



(CG10932):

Annotation Number : CG10932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029969
Gbrowse : chrX:7781299-7782785 (-) // 100.0 //
Probeset : 1638717_at
Accessions : protein= NP_572414;, nucleotide= NM_132186;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred fr
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase acti
FlyMine data for FBgn0029969.
BDGP gene expression has embryonic in situ data for CG10932: 4 pix of staining in 1 body parts.
Homophila reports that CG10932 is a close match (3e-40) to human gene HADHB (NP_000174), a gene associated with Trifunctional protein deficiency, 609015 (3).
VDRC has 2 RNAi stocks for FBgn0029969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 ± 54 of 4 0.30Down
Head559 ± 294 of 4 1.60Up
Eye270 ± 174 of 4 0.79None
Thoracicoabdominal ganglion116 ± 24 of 4 0.30Down
Salivary gland188 ± 184 of 4 0.55Down
Crop341 ± 104 of 4 1.00None
Midgut298 ± 184 of 4 0.90None
Tubule1688 ± 1044 of 4 4.90Up
Hindgut362 ± 154 of 4 1.10None
Heart579 ± 364 of 4 1.68Up
Fat body1038 ± 1024 of 4 3.02Up
Ovary387 ± 64 of 4 1.10None
Testis24 ± 24 of 4 0.10Down
Male accessory glands105 ± 64 of 4 0.30Down
Virgin spermatheca871 ± 414 of 4 2.53Up
Mated spermatheca567 ± 414 of 4 1.65Up
Adult carcass635 ± 304 of 4 1.80Up
Larval CNS315 ± 314 of 4 0.92None
Larval Salivary gland780 ± 584 of 4 2.27Up
Larval midgut325 ± 274 of 4 0.95None
Larval tubule372 ± 454 of 4 1.10None
Larval hindgut769 ± 424 of 4 2.24Up
Larval fat body227 ± 324 of 4 0.70Down
Larval trachea549 ± 844 of 4 1.60Up
Larval carcass753 ± 794 of 4 2.19Up
S2 cells (growing)146 ± 34 of 4 0.43Down
Whole fly343 ± 324 of 4

Looking for CG10932-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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