FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10939-RA through 18771 annotations produced 1 hits

SRY interacting protein 1 (Sip1):

Annotation Number : CG10939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010620
Gbrowse : chr2R:13282100-13292678 (+) // 100.0 //
Probeset : 1636440_at
Accessions : protein= NP_524712;, nucleotide= NM_079973;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0010620.
BDGP gene expression has embryonic in situ data for Sip1: 23 pix of staining in 26 body parts.
Homophila reports that CG10939 is a close match (3e-17) to human gene EBP50;NHERF1;NPHLOP2;SLC9A3R1 (NP_004243), a gene associated with Nephrolithiasis/osteoporosis, hypophosphatemic, 2, 612287 (3).
BioGrid reports that CG10939 interacts with CG17957 CG4853 .
VDRC has 3 RNAi stocks for FBgn0010620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 3	3 of 4	0.00	Down
Head	462 ± 17	4 of 4	1.70	Up
Eye	186 ± 17	4 of 4	0.67	Down
Thoracicoabdominal ganglion	13 ± 1	4 of 4	0.00	Down
Salivary gland	1430 ± 39	4 of 4	5.12	Up
Crop	738 ± 25	4 of 4	2.60	Up
Midgut	147 ± 4	4 of 4	0.50	Down
Tubule	369 ± 8	4 of 4	1.30	Up
Hindgut	1027 ± 12	4 of 4	3.70	Up
Heart	20 ± 1	4 of 4	0.07	Down
Fat body	18 ± 6	1 of 4	0.06	Down
Ovary	444 ± 11	4 of 4	1.60	Up
Testis	91 ± 6	4 of 4	0.30	Down
Male accessory glands	2418 ± 92	4 of 4	8.70	Up
Virgin spermatheca	224 ± 4	4 of 4	0.80	None
Mated spermatheca	324 ± 48	4 of 4	1.16	None
Adult carcass	239 ± 11	4 of 4	0.90	None
Larval CNS	360 ± 25	4 of 4	1.29	Up
Larval Salivary gland	1142 ± 36	4 of 4	4.09	Up
Larval midgut	341 ± 22	4 of 4	1.22	None
Larval tubule	170 ± 11	4 of 4	0.60	Down
Larval hindgut	744 ± 12	4 of 4	2.67	Up
Larval fat body	8 ± 2	0 of 4	0.00	Down
Larval trachea	964 ± 47	4 of 4	3.46	Up
Larval carcass	626 ± 15	4 of 4	2.25	Up
S2 cells (growing)	5 ± 1	0 of 4	0.02	Down
Whole fly	279 ± 18	4 of 4

Looking for CG10939-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720