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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10943-RA through 18771 annotations produced 1 hits



(CG10943):

Annotation Number : CG10943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036320
Gbrowse : chr3L:12854891-12855818 (-) // 100.0 //
Probeset : 1623812_at
Accessions : protein= NP_648609;, nucleotide= NM_140352;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036320.
BioGrid reports that CG10943 interacts with CG2023 CG11164 CG12767 CG15631 CG1603 CG16747 CG1836 CG2109 CG2199 CG30183 CG3937 CG5352 CG8282 CG8808 CG9277 CG30425 Dmel CG33694 Dmel CG33695 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland7 10 of 4 0.10Down
Crop7 10 of 4 0.10Down
Midgut1047 334 of 413.90Up
Tubule6 11 of 4 0.10Down
Hindgut97 24 of 4 1.30None
Heart1 00 of 4 0.02Down
Fat body15 43 of 4 0.20Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands8 10 of 4 0.10Down
Virgin spermatheca9 21 of 4 0.12Down
Mated spermatheca12 23 of 4 0.16Down
Adult carcass2 10 of 4 0.00Down
Larval CNS3 31 of 4 0.05Down
Larval Salivary gland2 10 of 4 0.03Down
Larval midgut713 494 of 4 9.50Up
Larval tubule4 10 of 4 0.10Down
Larval hindgut153 124 of 4 2.04Up
Larval fat body2 10 of 4 0.00Down
Larval trachea1 20 of 4 0.02Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly75 104 of 4

Looking for CG10943-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime