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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10950-RA through 18771 annotations produced 1 hits



(CG10950):

Annotation Number : CG10950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034205
Gbrowse : chr2R:13082707-13084664 (+) // 99.74 //
Probeset : 1630172_at
Accessions : protein= NP_611200;, nucleotide= NM_137356;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008320 // protein transmembrane transporter activity // i
FlyMine data for FBgn0034205.
BioGrid reports that CG10950 interacts with CG6510 .
VDRC has 2 RNAi stocks for FBgn0034205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.08Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.10Down
Tubule0 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.04Down
Fat body0 ± 00 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis440 ± 194 of 421.00Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland0 ± 00 of 4 0.04Down
Larval midgut0 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body69 ± 462 of 4 3.30None
Larval trachea0 ± 00 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly21 ± 24 of 4

Looking for CG10950-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime