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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10954-RA through 18771 annotations produced 1 hits



Arc-p34 (Arc-p34):

Annotation Number : CG10954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032859
Gbrowse : chr2L:20417060-20423027 (+) // 99.65 //
Probeset : 1623402_at
Accessions : protein= NP_610033;, nucleotide= NM_136189;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0032859.
BDGP gene expression has embryonic in situ data for Arc-p34: 4 pix of staining in 1 body parts.
BioGrid reports that CG10954 interacts with CG9429 CG11581 CG15136 .
TRiP has 1 RNAi stocks for FBgn0032859 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain257 34 of 4 0.40Down
Head190 94 of 4 0.30Down
Eye189 54 of 4 0.28Down
Thoracicoabdominal ganglion263 84 of 4 0.40Down
Salivary gland254 84 of 4 0.38Down
Crop267 114 of 4 0.40Down
Midgut711 104 of 4 1.10None
Tubule410 174 of 4 0.60Down
Hindgut318 94 of 4 0.50Down
Heart212 144 of 4 0.32Down
Fat body167 144 of 4 0.25Down
Ovary1311 174 of 4 2.00Up
Testis108 24 of 4 0.20Down
Male accessory glands386 144 of 4 0.60Down
Virgin spermatheca321 134 of 4 0.48Down
Mated spermatheca371 124 of 4 0.56Down
Adult carcass144 154 of 4 0.20Down
Larval CNS593 414 of 4 0.89None
Larval Salivary gland512 184 of 4 0.77Down
Larval midgut1116 294 of 4 1.68Up
Larval tubule612 184 of 4 0.90None
Larval hindgut738 274 of 4 1.11None
Larval fat body377 194 of 4 0.60Down
Larval trachea670 504 of 4 1.01None
Larval carcass524 364 of 4 0.79Down
S2 cells (growing)1162 214 of 4 1.75Up
Whole fly665 224 of 4

Looking for CG10954-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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