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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10955-RA through 18771 annotations produced 1 hits



CG10955 (Rtf1):

Annotation Number : CG10955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034722
Gbrowse : chr2R:18262596-18265352 (+) // 100.0 //
Probeset : 1633884_at
Accessions : protein= NP_611665;, nucleotide= NM_137821;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00056
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0034722.
BioGrid reports that CG10955 interacts with CG18591 CG13889 .
TRiP has 3 RNAi stocks for FBgn0034722 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034722 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 44 of 4 0.70Down
Head143 144 of 4 0.50Down
Eye114 84 of 4 0.40Down
Thoracicoabdominal ganglion173 104 of 4 0.60Down
Salivary gland93 44 of 4 0.33Down
Crop99 54 of 4 0.40Down
Midgut136 124 of 4 0.50Down
Tubule72 24 of 4 0.30Down
Hindgut113 64 of 4 0.40Down
Heart53 44 of 4 0.19Down
Fat body63 74 of 4 0.22Down
Ovary458 254 of 4 1.60Up
Testis597 264 of 4 2.10Up
Male accessory glands83 64 of 4 0.30Down
Virgin spermatheca40 34 of 4 0.14Down
Mated spermatheca46 64 of 4 0.17Down
Adult carcass103 74 of 4 0.40Down
Larval CNS225 154 of 4 0.80Down
Larval Salivary gland111 44 of 4 0.40Down
Larval midgut88 24 of 4 0.31Down
Larval tubule179 114 of 4 0.60Down
Larval hindgut107 34 of 4 0.38Down
Larval fat body174 344 of 4 0.60Down
Larval trachea128 124 of 4 0.45Down
Larval carcass126 154 of 4 0.45Down
S2 cells (growing)179 44 of 4 0.63Down
Whole fly282 174 of 4

Looking for CG10955-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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