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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10960-RC through 18771 annotations produced 1 hits



(CG10960):

Annotation Number : CG10960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036316
Gbrowse : chr3L:12817981-12836205 (-) // 100.0 //
Probeset : 1629469_s_at
Accessions : protein= NP_648605; /// NP_729842; /// NP_729843;, nucleotide= NM_140348; /// NM_168522; /// NM_168523;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0036316.
BDGP gene expression has embryonic in situ data for CG10960: 25 pix of staining in 17 body parts.
Homophila reports that CG10960 is a close match (2e-16) to human gene ATS;GLUT10;SLC2A10 (NP_110404), a gene associated with Arterial tortuosity syndrome, 208050 (3).
BioGrid reports that CG10960 interacts with CG6156 .
TRiP has 1 RNAi stocks for FBgn0036316 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1055 574 of 4 1.50Up
Head744 734 of 4 1.00None
Eye270 104 of 4 0.37Down
Thoracicoabdominal ganglion1027 164 of 4 1.40Up
Salivary gland133 154 of 4 0.18Down
Crop46 74 of 4 0.10Down
Midgut594 444 of 4 0.80None
Tubule325 244 of 4 0.40Down
Hindgut443 314 of 4 0.60Down
Heart1350 1414 of 4 1.87Up
Fat body4788 3184 of 4 6.61Up
Ovary999 514 of 4 1.40Up
Testis244 174 of 4 0.30Down
Male accessory glands405 134 of 4 0.60Down
Virgin spermatheca3387 1684 of 4 4.68Up
Mated spermatheca3567 2314 of 4 4.93Up
Adult carcass1562 1024 of 4 2.20Up
Larval CNS1150 614 of 4 1.59Up
Larval Salivary gland195 254 of 4 0.27Down
Larval midgut1050 1194 of 4 1.45None
Larval tubule109 114 of 4 0.20Down
Larval hindgut257 194 of 4 0.36Down
Larval fat body630 1184 of 4 0.90None
Larval trachea81 184 of 4 0.11Down
Larval carcass1073 1884 of 4 1.48None
S2 cells (growing)315 334 of 4 0.44Down
Whole fly724 254 of 4

Looking for CG10960-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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