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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10964-RA through 18771 annotations produced 1 hits



Sniffer (sni):

Annotation Number : CG10964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030026
Gbrowse : chrX:8135530-8137337 (-) // 100.0 //
Probeset : 1627015_at
Accessions : protein= NP_572466;, nucleotide= NM_132238;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity
FlyMine data for FBgn0030026.
BDGP gene expression has embryonic in situ data for sni: 4 pix of staining in 1 body parts.
Homophila reports that CG10964 is a close match (9e-12) to human gene RDH5 (NP_002896), a gene associated with Fundus albipunctatus, 136880 (3).
BioGrid reports that CG10964 interacts with CG9908 .
TRiP has 1 RNAi stocks for FBgn0030026 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 ± 24 of 4 0.70Down
Head165 ± 44 of 4 1.10None
Eye264 ± 114 of 4 1.77Up
Thoracicoabdominal ganglion146 ± 44 of 4 1.00None
Salivary gland219 ± 124 of 4 1.47Up
Crop169 ± 84 of 4 1.10None
Midgut282 ± 64 of 4 1.90Up
Tubule240 ± 244 of 4 1.60Up
Hindgut220 ± 44 of 4 1.50Up
Heart249 ± 94 of 4 1.67Up
Fat body232 ± 244 of 4 1.55Up
Ovary172 ± 44 of 4 1.20Up
Testis44 ± 04 of 4 0.30Down
Male accessory glands180 ± 144 of 4 1.20None
Virgin spermatheca347 ± 14 of 4 2.32Up
Mated spermatheca288 ± 144 of 4 1.93Up
Adult carcass189 ± 94 of 4 1.30Up
Larval CNS119 ± 74 of 4 0.80Down
Larval Salivary gland168 ± 54 of 4 1.12None
Larval midgut225 ± 224 of 4 1.51Up
Larval tubule139 ± 94 of 4 0.90None
Larval hindgut225 ± 64 of 4 1.51Up
Larval fat body220 ± 274 of 4 1.50None
Larval trachea165 ± 154 of 4 1.11None
Larval carcass163 ± 124 of 4 1.09None
S2 cells (growing)170 ± 84 of 4 1.14None
Whole fly149 ± 54 of 4

Looking for CG10964-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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