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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10969-RA through 18771 annotations produced 1 hits



(CG10969):

Annotation Number : CG10969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036310
Gbrowse : chr3L:12772027-12774121 (-) // 100.0 //
Probeset : 1638503_at
Accessions : protein= NP_648598;, nucleotide= NM_140341;
FlyMine data for FBgn0036310.
VDRC has 3 RNAi stocks for FBgn0036310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye4 01 of 4 0.19Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland6 30 of 4 0.29Down
Crop4 10 of 4 0.20Down
Midgut4 10 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut4 10 of 4 0.20Down
Heart1 00 of 4 0.06Down
Fat body6 30 of 4 0.27Down
Ovary2 10 of 4 0.10Down
Testis311 234 of 413.50Up
Male accessory glands5 20 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca3 11 of 4 0.14Down
Adult carcass6 30 of 4 0.30Down
Larval CNS3 10 of 4 0.14Down
Larval Salivary gland6 10 of 4 0.27Down
Larval midgut5 10 of 4 0.23Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut2 10 of 4 0.12Down
Larval fat body29 102 of 4 1.30None
Larval trachea4 41 of 4 0.18Down
Larval carcass2 10 of 4 0.12Down
S2 cells (growing)4 10 of 4 0.19Down
Whole fly23 34 of 4

Looking for CG10969-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime