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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10971-RA through 18771 annotations produced 1 hits



CG10971 (Hip1):

Annotation Number : CG10971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036309
Gbrowse : chr3L:12761531-12766669 (-) // 100.0 //
Probeset : 1633204_a_at
Accessions : protein= NP_648597; /// NP_729827;, nucleotide= NM_140340; /// NM_168513;
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence o
FlyMine data for FBgn0036309.
BioGrid reports that CG10971 interacts with CG13495 CG14410 CG6521 CG6733 CG7207 CG12811 CG18292 CG3299 CG3929 CG7849 CG9083 CG9769 CG9975 Dmel CG34365 .
TRiP has 2 RNAi stocks for FBgn0036309 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 44 of 4 1.00None
Head88 44 of 4 0.60Down
Eye63 24 of 4 0.41Down
Thoracicoabdominal ganglion194 54 of 4 1.30None
Salivary gland184 64 of 4 1.19None
Crop204 64 of 4 1.30Up
Midgut333 104 of 4 2.20Up
Tubule128 64 of 4 0.80Down
Hindgut173 84 of 4 1.10None
Heart84 134 of 4 0.54Down
Fat body40 34 of 4 0.26Down
Ovary270 74 of 4 1.70Up
Testis154 24 of 4 1.00None
Male accessory glands89 54 of 4 0.60Down
Virgin spermatheca60 64 of 4 0.39Down
Mated spermatheca83 54 of 4 0.54Down
Adult carcass56 24 of 4 0.40Down
Larval CNS252 204 of 4 1.63Up
Larval Salivary gland138 104 of 4 0.89None
Larval midgut703 244 of 4 4.53Up
Larval tubule194 74 of 4 1.30None
Larval hindgut301 134 of 4 1.94Up
Larval fat body115 114 of 4 0.70None
Larval trachea143 134 of 4 0.92None
Larval carcass90 34 of 4 0.58Down
S2 cells (growing)183 54 of 4 1.18None
Whole fly155 144 of 4

Looking for CG10971-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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