FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10977-RA through 18771 annotations produced 1 hits

MSP protein (CG33523):

Annotation Number : CG10977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053523
Gbrowse : chr3L:5919970-5923002 (+) // 100.0 //
Probeset : 1632338_a_at
Accessions : protein= NP_001014566; /// NP_001014567; /// NP_001014568; /// NP_001014569;, nucleotide= NM_001014566; /// NM_001014567; /// NM_001014568; /// NM_001014569;
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0053523.
TRiP has 1 RNAi stocks for FBgn0053523 available for purchase.
VDRC has 4 RNAi stocks for FBgn0053523 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	213 ± 11	4 of 4	0.60	Down
Head	261 ± 10	4 of 4	0.80	Down
Eye	254 ± 12	4 of 4	0.76	Down
Thoracicoabdominal ganglion	183 ± 3	4 of 4	0.50	Down
Salivary gland	164 ± 12	4 of 4	0.49	Down
Crop	1338 ± 36	4 of 4	4.00	Up
Midgut	424 ± 8	4 of 4	1.30	Up
Tubule	167 ± 13	4 of 4	0.50	Down
Hindgut	620 ± 14	4 of 4	1.90	Up
Heart	193 ± 8	4 of 4	0.58	Down
Fat body	146 ± 22	4 of 4	0.44	Down
Ovary	276 ± 2	4 of 4	0.80	Down
Testis	1134 ± 59	4 of 4	3.40	Up
Male accessory glands	676 ± 40	4 of 4	2.00	Up
Virgin spermatheca	59 ± 4	4 of 4	0.18	Down
Mated spermatheca	79 ± 5	4 of 4	0.24	Down
Adult carcass	199 ± 11	4 of 4	0.60	Down
Larval CNS	177 ± 15	4 of 4	0.53	Down
Larval Salivary gland	62 ± 7	4 of 4	0.19	Down
Larval midgut	325 ± 20	4 of 4	0.97	None
Larval tubule	217 ± 7	4 of 4	0.60	Down
Larval hindgut	159 ± 1	4 of 4	0.47	Down
Larval fat body	316 ± 31	4 of 4	0.90	None
Larval trachea	282 ± 5	4 of 4	0.84	Down
Larval carcass	151 ± 4	4 of 4	0.45	Down
S2 cells (growing)	285 ± 7	4 of 4	0.85	Down
Whole fly	335 ± 10	4 of 4

Looking for CG10977-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720