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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10986-RB through 18771 annotations produced 1 hits



garnet (g):

Annotation Number : CG10986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001087
Gbrowse : chrX:13621235-13630311 (-) // 100.0 //
Probeset : 1634453_at
Accessions : protein= NP_524785;, nucleotide= NM_080046;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electroni
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0001087.
BDGP gene expression has embryonic in situ data for g: 4 pix of staining in 1 body parts.
BioGrid reports that CG10986 interacts with CG4767 .
VDRC has 5 RNAi stocks for FBgn0001087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 ± 74 of 4 3.60Up
Head120 ± 84 of 4 1.40Up
Eye221 ± 54 of 4 2.66Up
Thoracicoabdominal ganglion233 ± 44 of 4 2.80Up
Salivary gland75 ± 54 of 4 0.90None
Crop115 ± 54 of 4 1.40Up
Midgut39 ± 34 of 4 0.50Down
Tubule51 ± 34 of 4 0.60Down
Hindgut65 ± 14 of 4 0.80Down
Heart126 ± 64 of 4 1.53Up
Fat body167 ± 64 of 4 2.01Up
Ovary185 ± 54 of 4 2.20Up
Testis14 ± 14 of 4 0.20Down
Male accessory glands134 ± 74 of 4 1.60Up
Virgin spermatheca122 ± 14 of 4 1.48Up
Mated spermatheca131 ± 74 of 4 1.58Up
Adult carcass58 ± 44 of 4 0.70Down
Larval CNS231 ± 264 of 4 2.78Up
Larval Salivary gland51 ± 74 of 4 0.62Down
Larval midgut55 ± 34 of 4 0.67Down
Larval tubule88 ± 34 of 4 1.10None
Larval hindgut102 ± 54 of 4 1.23None
Larval fat body166 ± 104 of 4 2.00Up
Larval trachea170 ± 144 of 4 2.05Up
Larval carcass99 ± 34 of 4 1.20Up
S2 cells (growing)152 ± 84 of 4 1.83Up
Whole fly83 ± 54 of 4

Looking for CG10986-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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