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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10990-RA through 18771 annotations produced 1 hits



(CG10990):

Annotation Number : CG10990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030520
Gbrowse : chrX:13640700-13649421 (-) // 100.0 //
Probeset : 1640020_at
Accessions : protein= NP_001096977; /// NP_572918;, nucleotide= NM_001103507; /// NM_132690;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0030520.
BioGrid reports that CG10990 interacts with CG12363 CG12985 CG15646 CG30263 CG4303 CG9796 .
TRiP has 1 RNAi stocks for FBgn0030520 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 84 of 4 2.20Up
Head158 74 of 4 0.90None
Eye678 344 of 4 4.00Up
Thoracicoabdominal ganglion380 94 of 4 2.20Up
Salivary gland329 344 of 4 1.95Up
Crop287 44 of 4 1.70Up
Midgut86 44 of 4 0.50Down
Tubule150 174 of 4 0.90None
Hindgut195 84 of 4 1.20None
Heart164 184 of 4 0.97None
Fat body64 144 of 4 0.38Down
Ovary319 34 of 4 1.90Up
Testis74 24 of 4 0.40Down
Male accessory glands323 364 of 4 1.90Up
Virgin spermatheca216 124 of 4 1.28None
Mated spermatheca134 54 of 4 0.79None
Adult carcass94 104 of 4 0.60Down
Larval CNS769 424 of 4 4.54Up
Larval Salivary gland198 234 of 4 1.17None
Larval midgut96 84 of 4 0.57Down
Larval tubule101 54 of 4 0.60Down
Larval hindgut364 594 of 4 2.15Up
Larval fat body215 244 of 4 1.30None
Larval trachea743 1364 of 4 4.39Up
Larval carcass245 364 of 4 1.45None
S2 cells (growing)551 254 of 4 3.25Up
Whole fly169 154 of 4

Looking for CG10990-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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