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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10992-RA through 18771 annotations produced 1 hits



cathepsin B (CG10992):

Annotation Number : CG10992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030521
Gbrowse : chrX:13674050-13676214 (-) // 100.0 //
Probeset : 1632152_at
Accessions : protein= NP_572920;, nucleotide= NM_132692;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0030521.
BDGP gene expression has embryonic in situ data for CG10992: 11 pix of staining in 4 body parts.
Homophila reports that CG10992 is a close match (5e-13) to human gene CTSK (NP_000387), a gene associated with Pycnodysostosis, 265800 (3).
BioGrid reports that CG10992 interacts with CG13423 CG13630 CG14204 CG1472 CG9163 CG9868 CG9930 .
TRiP has 2 RNAi stocks for FBgn0030521 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1203 ± 214 of 4 0.60Down
Head2561 ± 324 of 4 1.40Up
Eye2817 ± 1164 of 4 1.52Up
Thoracicoabdominal ganglion1055 ± 184 of 4 0.60Down
Salivary gland5697 ± 1374 of 4 3.08Up
Crop3601 ± 954 of 4 1.90Up
Midgut4592 ± 1054 of 4 2.50Up
Tubule5564 ± 1324 of 4 3.00Up
Hindgut3086 ± 714 of 4 1.70Up
Heart5262 ± 2944 of 4 2.84Up
Fat body3320 ± 2934 of 4 1.79Up
Ovary925 ± 214 of 4 0.50Down
Testis700 ± 354 of 4 0.40Down
Male accessory glands3093 ± 574 of 4 1.70Up
Virgin spermatheca4956 ± 1904 of 4 2.68Up
Mated spermatheca4425 ± 1514 of 4 2.39Up
Adult carcass3016 ± 714 of 4 1.60Up
Larval CNS804 ± 54 of 4 0.43Down
Larval Salivary gland2533 ± 474 of 4 1.37Up
Larval midgut5689 ± 1524 of 4 3.07Up
Larval tubule4647 ± 1144 of 4 2.50Up
Larval hindgut3599 ± 1484 of 4 1.94Up
Larval fat body2524 ± 3154 of 4 1.40None
Larval trachea1847 ± 1204 of 4 1.00None
Larval carcass1968 ± 2194 of 4 1.06None
S2 cells (growing)2357 ± 224 of 4 1.27Up
Whole fly1852 ± 674 of 4

Looking for CG10992-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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