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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10997-RA through 18771 annotations produced 1 hits



Chloride intracellular channel (Clic):

Annotation Number : CG10997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030529
Gbrowse : chrX:13707474-13716357 (-) // 100.0 //
Probeset : 1631073_at
Accessions : protein= NP_572928;, nucleotide= NM_132700;
Interpro : 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred
FlyMine data for FBgn0030529.
BDGP gene expression has embryonic in situ data for CG10997: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 ± 34 of 4 0.70Down
Head186 ± 174 of 4 0.80Down
Eye404 ± 114 of 4 1.64Up
Thoracicoabdominal ganglion152 ± 74 of 4 0.60Down
Salivary gland1165 ± 594 of 4 4.72Up
Crop688 ± 134 of 4 2.80Up
Midgut1123 ± 604 of 4 4.50Up
Tubule146 ± 54 of 4 0.60Down
Hindgut863 ± 224 of 4 3.50Up
Heart569 ± 184 of 4 2.31Up
Fat body93 ± 64 of 4 0.38Down
Ovary288 ± 64 of 4 1.20Up
Testis74 ± 34 of 4 0.30Down
Male accessory glands195 ± 84 of 4 0.80Down
Virgin spermatheca116 ± 54 of 4 0.47Down
Mated spermatheca160 ± 164 of 4 0.65Down
Adult carcass162 ± 134 of 4 0.70Down
Larval CNS323 ± 364 of 4 1.31Up
Larval Salivary gland610 ± 354 of 4 2.47Up
Larval midgut587 ± 414 of 4 2.38Up
Larval tubule153 ± 44 of 4 0.60Down
Larval hindgut803 ± 604 of 4 3.25Up
Larval fat body55 ± 34 of 4 0.20Down
Larval trachea1064 ± 304 of 4 4.31Up
Larval carcass317 ± 24 of 4 1.29Up
S2 cells (growing)1328 ± 154 of 4 5.38Up
Whole fly246 ± 74 of 4

Looking for CG10997-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime