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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11001-RA through 18771 annotations produced 1 hits



FK506-binding protein (FK506-bp2):

Annotation Number : CG11001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013954
Gbrowse : chr2R:15177609-15178469 (+) // 100.0 //
Probeset : 1638415_at
Accessions : protein= NP_523792;, nucleotide= NM_079068;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // non-traceable author
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0013954.
BDGP gene expression has embryonic in situ data for FK506-bp2: 4 pix of staining in 1 body parts.
Homophila reports that CG11001 is a close match (3e-25) to human gene FKBP5;FKBP51 (NP_004108), a gene associated with {Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3).
BioGrid reports that CG11001 interacts with CG11486 CG11326 CG15112 CG15302 CG1915 CG3299 CG3937 CG3954 CG5137 CG7434 CG9327 CG9986 .
VDRC has 2 RNAi stocks for FBgn0013954 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1595 ± 204 of 4 0.70Down
Head1980 ± 364 of 4 0.90Down
Eye1684 ± 394 of 4 0.75Down
Thoracicoabdominal ganglion1162 ± 204 of 4 0.50Down
Salivary gland2200 ± 434 of 4 0.98None
Crop2218 ± 354 of 4 1.00None
Midgut2177 ± 524 of 4 1.00None
Tubule2853 ± 724 of 4 1.30Up
Hindgut2227 ± 774 of 4 1.00None
Heart2501 ± 1224 of 4 1.11None
Fat body3100 ± 1264 of 4 1.37Up
Ovary2517 ± 474 of 4 1.10Up
Testis962 ± 274 of 4 0.40Down
Male accessory glands2364 ± 754 of 4 1.00None
Virgin spermatheca3181 ± 994 of 4 1.41Up
Mated spermatheca3021 ± 1004 of 4 1.34Up
Adult carcass2395 ± 394 of 4 1.10None
Larval CNS2599 ± 714 of 4 1.15Up
Larval Salivary gland3343 ± 1264 of 4 1.48Up
Larval midgut1517 ± 434 of 4 0.67Down
Larval tubule2362 ± 654 of 4 1.00None
Larval hindgut2590 ± 124 of 4 1.15Up
Larval fat body3063 ± 2754 of 4 1.40None
Larval trachea3445 ± 2164 of 4 1.53Up
Larval carcass2688 ± 1964 of 4 1.19None
S2 cells (growing)2981 ± 514 of 4 1.32Up
Whole fly2256 ± 684 of 4

Looking for CG11001-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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