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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11009-RA through 18771 annotations produced 1 hits



(CG11009):

Annotation Number : CG11009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036318
Gbrowse : chr3L:12843261-12846270 (+) // 100.0 //
Probeset : 1635218_at
Accessions : protein= NP_001137944; /// NP_001137945; /// NP_648607;, nucleotide= NM_001144472; /// NM_001144473; /// NM_140350;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036318.
BioGrid reports that CG11009 interacts with CG14119 CG3529 CG2960 .
TRiP has 1 RNAi stocks for FBgn0036318 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036318 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain861 104 of 4 2.10Up
Head857 374 of 4 2.00Up
Eye1133 374 of 4 2.70Up
Thoracicoabdominal ganglion1068 184 of 4 2.50Up
Salivary gland3036 854 of 4 7.23Up
Crop1392 384 of 4 3.30Up
Midgut1144 44 of 4 2.70Up
Tubule1135 264 of 4 2.70Up
Hindgut1255 144 of 4 3.00Up
Heart710 104 of 4 1.69Up
Fat body251 224 of 4 0.60Down
Ovary206 24 of 4 0.50Down
Testis201 44 of 4 0.50Down
Male accessory glands1411 614 of 4 3.40Up
Virgin spermatheca359 184 of 4 0.86Down
Mated spermatheca412 324 of 4 0.98None
Adult carcass531 184 of 4 1.30Up
Larval CNS365 234 of 4 0.87Down
Larval Salivary gland1348 834 of 4 3.21Up
Larval midgut1065 344 of 4 2.54Up
Larval tubule1603 324 of 4 3.80Up
Larval hindgut1068 104 of 4 2.54Up
Larval fat body464 224 of 4 1.10None
Larval trachea536 134 of 4 1.28Up
Larval carcass497 314 of 4 1.19None
S2 cells (growing)530 184 of 4 1.26Up
Whole fly420 134 of 4

Looking for CG11009-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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