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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1102-RA through 18771 annotations produced 1 hits



Melanization Protease 1 (MP1):

Annotation Number : CG1102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027930
Gbrowse : chr3R:133629-135559 (+) // 100.0 //
Probeset : 1626052_at
Accessions : protein= NP_001138002; /// NP_649450;, nucleotide= NM_001144530; /// NM_141193;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0027930.
BDGP gene expression has embryonic in situ data for BEST:GH02921: 12 pix of staining in 3 body parts.
Homophila reports that CG1102 is a close match (2e-11) to human gene BF;CFB;GBG (NP_001701), a gene associated with {Macular degeneration, age-related, reduced risk of}, 603075 (3).
BioGrid reports that CG1102 interacts with CG17667 .
VDRC has 3 RNAi stocks for FBgn0027930 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 0.40Down
Head524 ± 234 of 4 4.90Up
Eye292 ± 384 of 4 2.75Up
Thoracicoabdominal ganglion62 ± 24 of 4 0.60Down
Salivary gland42 ± 60 of 4 0.40Down
Crop494 ± 64 of 4 4.60Up
Midgut43 ± 34 of 4 0.40Down
Tubule22 ± 23 of 4 0.20Down
Hindgut147 ± 84 of 4 1.40Up
Heart558 ± 344 of 4 5.25Up
Fat body911 ± 644 of 4 8.58Up
Ovary20 ± 14 of 4 0.20Down
Testis38 ± 31 of 4 0.40Down
Male accessory glands23 ± 21 of 4 0.20Down
Virgin spermatheca694 ± 254 of 4 6.53Up
Mated spermatheca670 ± 264 of 4 6.31Up
Adult carcass510 ± 344 of 4 4.80Up
Larval CNS57 ± 114 of 4 0.54Down
Larval Salivary gland75 ± 74 of 4 0.71Down
Larval midgut32 ± 14 of 4 0.31Down
Larval tubule28 ± 44 of 4 0.30Down
Larval hindgut103 ± 84 of 4 0.97None
Larval fat body1215 ± 1294 of 411.40Up
Larval trachea234 ± 234 of 4 2.21Up
Larval carcass128 ± 94 of 4 1.21None
S2 cells (growing)329 ± 84 of 4 3.10Up
Whole fly106 ± 94 of 4

Looking for CG1102-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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