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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11025-RA through 18771 annotations produced 1 hits



isopeptidase T-3 (isopeptidase-T-3):

Annotation Number : CG11025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028372
Gbrowse : chr2R:15558123-15560982 (+) // 100.0 //
Probeset : 1624145_a_at
Accessions : protein= NP_611439; /// NP_725921;, nucleotide= NM_137595; /// NM_166373;
Interpro : 0004221 // ubiquitin thiolesterase activity // non-traceable author statement /// 0004221 // ubiquitin thiolesterase act
FlyMine data for FBgn0028372.
BioGrid reports that CG11025 interacts with CG11409 CG1906 .
VDRC has 3 RNAi stocks for FBgn0028372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 44 of 4 2.40Up
Head95 74 of 4 1.00None
Eye90 44 of 4 0.95None
Thoracicoabdominal ganglion251 44 of 4 2.60Up
Salivary gland89 44 of 4 0.94None
Crop108 54 of 4 1.10None
Midgut51 44 of 4 0.50Down
Tubule92 54 of 4 1.00None
Hindgut54 04 of 4 0.60Down
Heart64 34 of 4 0.68Down
Fat body37 44 of 4 0.39Down
Ovary134 24 of 4 1.40Up
Testis174 84 of 4 1.80Up
Male accessory glands53 14 of 4 0.60Down
Virgin spermatheca77 74 of 4 0.81None
Mated spermatheca82 44 of 4 0.87None
Adult carcass43 44 of 4 0.50Down
Larval CNS286 74 of 4 3.02Up
Larval Salivary gland59 54 of 4 0.63Down
Larval midgut44 14 of 4 0.47Down
Larval tubule92 24 of 4 1.00None
Larval hindgut62 34 of 4 0.66Down
Larval fat body67 144 of 4 0.70None
Larval trachea67 24 of 4 0.72Down
Larval carcass47 44 of 4 0.50Down
S2 cells (growing)137 34 of 4 1.45Up
Whole fly94 74 of 4

Looking for CG11025-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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