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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11029-RA through 18771 annotations produced 1 hits



(CG11029):

Annotation Number : CG11029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031735
Gbrowse : chr2L:5746276-5747620 (+) // 100.0 //
Probeset : 1625255_at
Accessions : protein= NP_608955;, nucleotide= NM_135111;
Interpro : "0004622 // lysophospholipase activity // inferred from sequence or structural similarity /// 0004622 // lysophospholipa
FlyMine data for FBgn0031735.
BioGrid reports that CG11029 interacts with CG2713 .
VDRC has 2 RNAi stocks for FBgn0031735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 0.40Down
Head10 ± 12 of 4 0.50None
Eye4 ± 11 of 4 0.24Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.30Down
Salivary gland5 ± 10 of 4 0.26Down
Crop7 ± 10 of 4 0.40Down
Midgut41 ± 94 of 4 2.20None
Tubule4 ± 00 of 4 0.20Down
Hindgut8 ± 10 of 4 0.40Down
Heart2 ± 00 of 4 0.14Down
Fat body5 ± 20 of 4 0.30Down
Ovary6 ± 00 of 4 0.40Down
Testis5 ± 00 of 4 0.30Down
Male accessory glands3 ± 00 of 4 0.20Down
Virgin spermatheca15 ± 12 of 4 0.83None
Mated spermatheca21 ± 11 of 4 1.13None
Adult carcass18 ± 30 of 4 1.00None
Larval CNS6 ± 20 of 4 0.33Down
Larval Salivary gland6 ± 30 of 4 0.35Down
Larval midgut17 ± 10 of 4 0.94None
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut5 ± 20 of 4 0.30Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea193 ± 394 of 410.18Up
Larval carcass10 ± 20 of 4 0.57None
S2 cells (growing)7 ± 10 of 4 0.39Down
Whole fly19 ± 33 of 4

Looking for CG11029-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime