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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1104-RA through 18771 annotations produced 1 hits



(CG1104):

Annotation Number : CG1104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037467
Gbrowse : chr3R:2897345-2900172 (-) // 100.0 //
Probeset : 1624502_a_at
Accessions : protein= NP_649690; /// NP_731124;, nucleotide= NM_141433; /// NM_169165;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electro
FlyMine data for FBgn0037467.
BDGP gene expression has embryonic in situ data for CG1104: 17 pix of staining in 8 body parts.
BioGrid reports that CG1104 interacts with CG5862 CG11525 CG1259 CG13067 CG15695 CG1691 CG1746 CG1883 CG1913 CG2033 CG2713 CG32758 CG3938 CG4087 CG4264 CG4463 CG5820 CG6046 CG6707 CG6846 CG7808 CG8532 CG8640 CG9238 .
VDRC has 2 RNAi stocks for FBgn0037467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 94 of 4 2.00Up
Head151 84 of 4 1.40Up
Eye174 54 of 4 1.63Up
Thoracicoabdominal ganglion185 64 of 4 1.70Up
Salivary gland714 114 of 4 6.70Up
Crop194 64 of 4 1.80Up
Midgut209 44 of 4 2.00Up
Tubule167 34 of 4 1.60Up
Hindgut178 54 of 4 1.70Up
Heart144 34 of 4 1.35Up
Fat body247 194 of 4 2.32Up
Ovary78 34 of 4 0.70Down
Testis237 124 of 4 2.20Up
Male accessory glands615 184 of 4 5.80Up
Virgin spermatheca192 94 of 4 1.80Up
Mated spermatheca233 174 of 4 2.19Up
Adult carcass158 74 of 4 1.50Up
Larval CNS122 34 of 4 1.15Up
Larval Salivary gland939 844 of 4 8.81Up
Larval midgut188 64 of 4 1.76Up
Larval tubule197 54 of 4 1.90Up
Larval hindgut189 24 of 4 1.78Up
Larval fat body210 104 of 4 2.00Up
Larval trachea179 124 of 4 1.68Up
Larval carcass177 64 of 4 1.67Up
S2 cells (growing)243 84 of 4 2.28Up
Whole fly106 44 of 4

Looking for CG1104-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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