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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11052-RA through 18771 annotations produced 1 hits



(CG11052):

Annotation Number : CG11052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040524
Gbrowse : chr3R:3833969-3834773 (-) // 100.0 //
Probeset : 1630749_at
Accessions : protein= NP_652181;, nucleotide= NM_143924;
Interpro : 0003998 // acylphosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred fr
FlyMine data for FBgn0040524.
BDGP gene expression has embryonic in situ data for CG2767: 10 pix of staining in 14 body parts.
BioGrid reports that CG11052 interacts with CG32354 .
VDRC has 2 RNAi stocks for FBgn0040524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head6 ± 11 of 4 0.20Down
Eye4 ± 10 of 4 0.17Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.20Down
Salivary gland9 ± 20 of 4 0.33Down
Crop3 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.20Down
Hindgut7 ± 02 of 4 0.30Down
Heart2 ± 10 of 4 0.09Down
Fat body7 ± 40 of 4 0.24Down
Ovary2 ± 00 of 4 0.10Down
Testis315 ± 124 of 410.90Up
Male accessory glands10 ± 22 of 4 0.40Down
Virgin spermatheca6 ± 00 of 4 0.22Down
Mated spermatheca2 ± 10 of 4 0.10Down
Adult carcass38 ± 44 of 4 1.30None
Larval CNS7 ± 33 of 4 0.25Down
Larval Salivary gland6 ± 20 of 4 0.22Down
Larval midgut5 ± 10 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.11Down
Larval fat body64 ± 224 of 4 2.20None
Larval trachea5 ± 30 of 4 0.18Down
Larval carcass2 ± 00 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly28 ± 14 of 4

Looking for CG11052-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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