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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11059-RA through 18771 annotations produced 1 hits



calsyntenin-1 (cals):

Annotation Number : CG11059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039928
Gbrowse : chr4:1135803-1144024 (-) // 100.0 //
Probeset : 1628842_s_at
Accessions : protein= NP_524632; /// NP_726646;, nucleotide= NM_079893; /// NM_166823;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inf
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0039928.
BDGP gene expression has embryonic in situ data for calsyntenin-1: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0039928 available for purchase.
VDRC has 5 RNAi stocks for FBgn0039928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1768 ± 594 of 4 5.80Up
Head994 ± 604 of 4 3.30Up
Eye638 ± 334 of 4 2.10Up
Thoracicoabdominal ganglion1593 ± 634 of 4 5.20Up
Salivary gland930 ± 364 of 4 3.06Up
Crop777 ± 94 of 4 2.60Up
Midgut242 ± 74 of 4 0.80None
Tubule693 ± 334 of 4 2.30Up
Hindgut801 ± 354 of 4 2.60Up
Heart509 ± 274 of 4 1.68Up
Fat body522 ± 394 of 4 1.72Up
Ovary100 ± 54 of 4 0.30Down
Testis85 ± 14 of 4 0.30Down
Male accessory glands1043 ± 394 of 4 3.40Up
Virgin spermatheca1150 ± 334 of 4 3.79Up
Mated spermatheca1157 ± 854 of 4 3.81Up
Adult carcass375 ± 94 of 4 1.20None
Larval CNS1188 ± 604 of 4 3.91Up
Larval Salivary gland565 ± 324 of 4 1.86Up
Larval midgut177 ± 54 of 4 0.58Down
Larval tubule549 ± 234 of 4 1.80Up
Larval hindgut605 ± 114 of 4 1.99Up
Larval fat body453 ± 354 of 4 1.50Up
Larval trachea491 ± 244 of 4 1.62Up
Larval carcass615 ± 254 of 4 2.02Up
S2 cells (growing)340 ± 114 of 4 1.12None
Whole fly304 ± 364 of 4

Looking for CG11059-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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