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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11063-RB through 18771 annotations produced 1 hits



Ajuba LIM protein (jub):

Annotation Number : CG11063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030530
Gbrowse : chrX:13720354-13724292 (-) // 100.0 //
Probeset : 1625797_at
Accessions : protein= NP_572930;, nucleotide= NM_132702;
Pathway : 0005912 // adherens junction // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred
FlyMine data for FBgn0030530.
Homophila reports that CG11063 is a close match (1e-15) to human gene CYPHER;KIAA01613;LDB3;ZASP (NP_009009), a gene associated with Cardiomyopathy, dilated (3);Cardiomyopathy, dilated, with left ventricular noncompaction (3);Myopathy, myofibrillar, ZASP-related, 609452 (3).
BioGrid reports that CG11063 interacts with CG31550 .
TRiP has 2 RNAi stocks for FBgn0030530 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 34 of 4 0.80None
Head28 ± 34 of 4 0.40Down
Eye28 ± 14 of 4 0.38Down
Thoracicoabdominal ganglion45 ± 44 of 4 0.60Down
Salivary gland38 ± 24 of 4 0.52Down
Crop32 ± 04 of 4 0.40Down
Midgut47 ± 84 of 4 0.60None
Tubule73 ± 24 of 4 1.00None
Hindgut90 ± 24 of 4 1.20None
Heart50 ± 54 of 4 0.68None
Fat body24 ± 44 of 4 0.33Down
Ovary126 ± 24 of 4 1.70Up
Testis17 ± 14 of 4 0.20Down
Male accessory glands50 ± 54 of 4 0.70None
Virgin spermatheca41 ± 24 of 4 0.56Down
Mated spermatheca38 ± 14 of 4 0.52Down
Adult carcass27 ± 23 of 4 0.40Down
Larval CNS134 ± 114 of 4 1.80Up
Larval Salivary gland53 ± 34 of 4 0.72None
Larval midgut71 ± 54 of 4 0.96None
Larval tubule109 ± 14 of 4 1.50Up
Larval hindgut96 ± 74 of 4 1.30None
Larval fat body57 ± 104 of 4 0.80None
Larval trachea145 ± 124 of 4 1.95Up
Larval carcass62 ± 124 of 4 0.85None
S2 cells (growing)102 ± 44 of 4 1.37Up
Whole fly74 ± 84 of 4

Looking for CG11063-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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