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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11081-RA through 18771 annotations produced 1 hits



Plexin A (plexA):

Annotation Number : CG11081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025741
Gbrowse : chr4:1034029-1047720 (-) // 100.0 //
Probeset : 1640271_s_at
Accessions : protein= NP_001033804; /// NP_524637; /// NP_726627; /// NP_726628; /// NP_726629;, nucleotide= NM_001038715; /// NM_079898; /// NM_166804; /// NM_166805; /// NM_166806;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0025741.
Homophila reports that CG11081 is a close match (6e-12) to human gene CORD10;RP35;SEMA4A;SEMB (NP_071762), a gene associated with Cone-rod dystrophy 10, 610283 (3);Retinitis pigmentosa 35, 610282 (3).
BioGrid reports that CG11081 interacts with CG15293 CG5866 CG1697 CG3665 .
TRiP has 1 RNAi stocks for FBgn0025741 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 ± 134 of 4 0.50Down
Head210 ± 194 of 4 0.60Down
Eye182 ± 44 of 4 0.48Down
Thoracicoabdominal ganglion174 ± 54 of 4 0.50Down
Salivary gland218 ± 174 of 4 0.57Down
Crop410 ± 104 of 4 1.10None
Midgut298 ± 114 of 4 0.80Down
Tubule356 ± 114 of 4 0.90Down
Hindgut274 ± 154 of 4 0.70Down
Heart248 ± 154 of 4 0.65Down
Fat body291 ± 274 of 4 0.77Down
Ovary983 ± 284 of 4 2.60Up
Testis256 ± 84 of 4 0.70Down
Male accessory glands280 ± 94 of 4 0.70Down
Virgin spermatheca396 ± 204 of 4 1.04None
Mated spermatheca437 ± 254 of 4 1.15None
Adult carcass193 ± 44 of 4 0.50Down
Larval CNS446 ± 344 of 4 1.17Up
Larval Salivary gland565 ± 284 of 4 1.49Up
Larval midgut385 ± 254 of 4 1.01None
Larval tubule731 ± 314 of 4 1.90Up
Larval hindgut435 ± 304 of 4 1.14None
Larval fat body574 ± 174 of 4 1.50Up
Larval trachea444 ± 634 of 4 1.17None
Larval carcass706 ± 194 of 4 1.86Up
S2 cells (growing)372 ± 84 of 4 0.98None
Whole fly380 ± 124 of 4

Looking for CG11081-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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