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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11085-RA through 18771 annotations produced 1 hits


Annotation Number : CG11085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030408
Gbrowse : chrX:12513677-12514954 (+) // 100.0 //
Probeset : 1637455_at
Accessions : protein= NP_572815;, nucleotide= NM_132587;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0030408.
Homophila reports that CG11085 is a close match (8e-11) to human gene H6;HMX1 (NP_061815), a gene associated with Oculoauricular syndrome, 612109 (3).
TRiP has 1 RNAi stocks for FBgn0030408 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030408 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 412.00Up
Head3 00 of 4 2.60None
Eye3 00 of 4 3.29Up
Thoracicoabdominal ganglion1 00 of 4 0.80None
Salivary gland1 00 of 4 0.90None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.80None
Tubule1 00 of 4 1.20None
Hindgut1 00 of 4 1.00None
Heart1 00 of 4 1.31None
Fat body2 10 of 4 2.04None
Ovary0 00 of 4 0.40None
Testis0 00 of 4 0.30None
Male accessory glands1 00 of 4 1.10None
Virgin spermatheca1 00 of 4 0.90None
Mated spermatheca3 00 of 4 2.58None
Adult carcass4 10 of 4 3.40None
Larval CNS4 21 of 4 4.04None
Larval Salivary gland1 00 of 4 1.60None
Larval midgut1 00 of 4 1.13None
Larval tubule1 00 of 4 0.80None
Larval hindgut0 00 of 4 0.69None
Larval fat body0 00 of 4 0.60None
Larval trachea1 10 of 4 0.96None
Larval carcass1 00 of 4 1.08None
S2 cells (growing)0 00 of 4 0.65None
Whole fly1 00 of 4

Looking for CG11085-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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