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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11092-RA through 18771 annotations produced 1 hits



(CG11092):

Annotation Number : CG11092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027537
Gbrowse : chrX:13716835-13719947 (+) // 100.0 //
Probeset : 1629756_at
Accessions : protein= NP_572929;, nucleotide= NM_132701;
Pathway : 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005643 // nuclear pore // inferred from
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027537.
BDGP gene expression has embryonic in situ data for BcDNA:LD21129: 4 pix of staining in 1 body parts.
BioGrid reports that CG11092 interacts with CG16899 CG12190 CG17903 CG2146 CG31349 CG3210 CG32406 CG3612 CG4104 CG4233 CG9983 .
TRiP has 3 RNAi stocks for FBgn0027537 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027537 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 24 of 4 0.30Down
Head63 34 of 4 0.30Down
Eye44 44 of 4 0.21Down
Thoracicoabdominal ganglion55 34 of 4 0.30Down
Salivary gland56 31 of 4 0.26Down
Crop85 24 of 4 0.40Down
Midgut85 34 of 4 0.40Down
Tubule119 44 of 4 0.60Down
Hindgut94 24 of 4 0.40Down
Heart609 264 of 4 2.84Up
Fat body94 94 of 4 0.44Down
Ovary359 64 of 4 1.70Up
Testis87 34 of 4 0.40Down
Male accessory glands111 34 of 4 0.50Down
Virgin spermatheca59 14 of 4 0.28Down
Mated spermatheca89 14 of 4 0.42Down
Adult carcass86 53 of 4 0.40Down
Larval CNS328 134 of 4 1.53Up
Larval Salivary gland222 104 of 4 1.04None
Larval midgut78 44 of 4 0.37Down
Larval tubule76 24 of 4 0.40Down
Larval hindgut135 34 of 4 0.63Down
Larval fat body55 54 of 4 0.30Down
Larval trachea207 254 of 4 0.97None
Larval carcass148 54 of 4 0.69Down
S2 cells (growing)342 94 of 4 1.60Up
Whole fly214 164 of 4

Looking for CG11092-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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