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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11112-RA through 18771 annotations produced 1 hits


(CG11112):

Annotation Number : CG11112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033164
Gbrowse : chr2R:3288469-3288949 (+) // 100.0 //
Probeset : 1640544_a_at
Accessions : protein= NP_001097207;, nucleotide= NM_001103737;
FlyMine data for FBgn0033164.
VDRC has 3 RNAi stocks for FBgn0033164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland8 ± 41 of 4 0.12Down
Crop6 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body9 ± 61 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis7 ± 42 of 4 0.10Down
Male accessory glands6124 ± 1664 of 488.00Up
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass9 ± 11 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly69 ± 104 of 4

Looking for CG11112-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime