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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1112-RA through 18771 annotations produced 1 hits



fragment H (alpha-Est7):

Annotation Number : CG1112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015575
Gbrowse : chr3R:3345283-3349476 (-) // 100.0 //
Probeset : 1637255_a_at
Accessions : protein= NP_524261; /// NP_731167;, nucleotide= NM_079537; /// NM_169188;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // inferred
FlyMine data for FBgn0015575.
BDGP gene expression has embryonic in situ data for alpha-Est7: 22 pix of staining in 5 body parts.
Homophila reports that CG1112 is a close match (3e-12) to human gene ASPGX2;AUTSX2;KIAA1260;NLGN4 (NP_851849), a gene associated with Mental retardation, X-linked, 300495 (3);{Asperger syndrome, susceptibility to, X-linked-2}, 300497 (3);{Autism, susceptibility to, X-linked-2}, 300495 (3).
BioGrid reports that CG1112 interacts with CG4863 .
TRiP has 1 RNAi stocks for FBgn0015575 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 34 of 4 0.20Down
Head1658 ± 734 of 4 5.40Up
Eye799 ± 644 of 4 2.61Up
Thoracicoabdominal ganglion57 ± 54 of 4 0.20Down
Salivary gland83 ± 94 of 4 0.27Down
Crop3909 ± 1024 of 412.80Up
Midgut800 ± 254 of 4 2.60Up
Tubule315 ± 514 of 4 1.00None
Hindgut389 ± 264 of 4 1.30None
Heart1223 ± 484 of 4 4.00Up
Fat body2305 ± 1924 of 4 7.53Up
Ovary10 ± 03 of 4 0.00Down
Testis17 ± 14 of 4 0.10Down
Male accessory glands475 ± 404 of 4 1.60Up
Virgin spermatheca2135 ± 1154 of 4 6.98Up
Mated spermatheca2016 ± 1314 of 4 6.59Up
Adult carcass1594 ± 1014 of 4 5.20Up
Larval CNS35 ± 84 of 4 0.12Down
Larval Salivary gland349 ± 154 of 4 1.14None
Larval midgut530 ± 294 of 4 1.73Up
Larval tubule131 ± 74 of 4 0.40Down
Larval hindgut406 ± 174 of 4 1.33Up
Larval fat body1332 ± 1244 of 4 4.40Up
Larval trachea239 ± 734 of 4 0.78None
Larval carcass183 ± 124 of 4 0.60Down
S2 cells (growing)490 ± 74 of 4 1.60Up
Whole fly306 ± 224 of 4

Looking for CG1112-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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