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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11125-RA through 18771 annotations produced 1 hits



(CG11125):

Annotation Number : CG11125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033174
Gbrowse : chr2R:3334983-3336920 (+) // 100.0 //
Probeset : 1626167_at
Accessions : protein= NP_001163071; /// NP_610280;, nucleotide= NM_001169600; /// NM_136436;
FlyMine data for FBgn0033174.
BDGP gene expression has embryonic in situ data for CG11125: 8 pix of staining in 4 body parts.
BioGrid reports that CG11125 interacts with CG13868 CG5450 CG11896 CG6998 CG9326 Dmel CG33970 .
TRiP has 1 RNAi stocks for FBgn0033174 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 10 of 4 0.10Down
Head26 ± 12 of 4 0.20Down
Eye54 ± 34 of 4 0.46Down
Thoracicoabdominal ganglion13 ± 10 of 4 0.10Down
Salivary gland10 ± 40 of 4 0.09Down
Crop25 ± 32 of 4 0.20Down
Midgut7 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut14 ± 10 of 4 0.10Down
Heart5 ± 10 of 4 0.05Down
Fat body12 ± 30 of 4 0.11Down
Ovary41 ± 24 of 4 0.30Down
Testis1408 ± 434 of 411.90Up
Male accessory glands90 ± 74 of 4 0.80Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca3 ± 00 of 4 0.03Down
Adult carcass13 ± 40 of 4 0.10Down
Larval CNS26 ± 34 of 4 0.22Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut14 ± 20 of 4 0.12Down
Larval tubule9 ± 10 of 4 0.10Down
Larval hindgut11 ± 10 of 4 0.10Down
Larval fat body161 ± 834 of 4 1.40None
Larval trachea27 ± 114 of 4 0.23Down
Larval carcass7 ± 10 of 4 0.06Down
S2 cells (growing)90 ± 24 of 4 0.76Down
Whole fly118 ± 74 of 4

Looking for CG11125-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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