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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11126-RA through 18771 annotations produced 1 hits


CG1961 (CG42249):

Annotation Number : CG11126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259101
Gbrowse : chrX:11001243-11001957 (+) // 100.0 //
Probeset : 1623371_at
Accessions : protein= NP_572683; /// NP_572684;, nucleotide= NM_132455; /// NM_132456; /// NM_132456;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0259101.
BioGrid reports that CG11126 interacts with CG1871 .
TRiP has 1 RNAi stocks for FBgn0259101 available for purchase.
VDRC has 9 RNAi stocks for FBgn0259101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head8 ± 30 of 4 0.20Down
Eye2 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.19Down
Crop10 ± 10 of 4 0.30Down
Midgut465 ± 184 of 414.20Up
Tubule167 ± 64 of 4 5.10Up
Hindgut35 ± 34 of 4 1.10None
Heart2 ± 10 of 4 0.08Down
Fat body10 ± 50 of 4 0.33Down
Ovary2 ± 10 of 4 0.10Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca7 ± 00 of 4 0.22Down
Mated spermatheca6 ± 10 of 4 0.21Down
Adult carcass16 ± 40 of 4 0.50Down
Larval CNS2 ± 10 of 4 0.09Down
Larval Salivary gland4 ± 10 of 4 0.15Down
Larval midgut257 ± 134 of 4 7.87Up
Larval tubule93 ± 124 of 4 2.80Up
Larval hindgut40 ± 54 of 4 1.24None
Larval fat body10 ± 30 of 4 0.30Down
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass16 ± 00 of 4 0.51Down
S2 cells (growing)6 ± 20 of 4 0.19Down
Whole fly32 ± 44 of 4

Looking for CG11126-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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