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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11128-RA through 18771 annotations produced 1 hits



slimfast (slif):

Annotation Number : CG11128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037203
Gbrowse : chr3L:22874145-22886929 (+) // 100.0 //
Probeset : 1630957_s_at
Accessions : protein= NP_649428; /// NP_730764; /// NP_730765;, nucleotide= NM_141171; /// NM_168977; /// NM_168978;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015326 // cationic
FlyMine data for FBgn0037203.
BDGP gene expression has embryonic in situ data for CG11128: 11 pix of staining in 4 body parts.
Homophila reports that CG11128 is a close match (7e-11) to human gene CSNU3;SLC7A9 (NP_055085), a gene associated with Cystinuria, type II (3);Cystinuria, type III (3).
BioGrid reports that CG11128 interacts with CG12022 CG33193 CG5375 CG7524 .
VDRC has 6 RNAi stocks for FBgn0037203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 04 of 4 0.00Down
Head69 24 of 4 0.20Down
Eye45 24 of 4 0.12Down
Thoracicoabdominal ganglion69 44 of 4 0.20Down
Salivary gland54 64 of 4 0.14Down
Crop69 24 of 4 0.20Down
Midgut1228 444 of 4 3.10Up
Tubule844 1274 of 4 2.10Up
Hindgut491 154 of 4 1.20Up
Heart6 02 of 4 0.02Down
Fat body16 54 of 4 0.04Down
Ovary813 84 of 4 2.10Up
Testis113 14 of 4 0.30Down
Male accessory glands43 14 of 4 0.10Down
Virgin spermatheca50 14 of 4 0.13Down
Mated spermatheca82 104 of 4 0.21Down
Adult carcass81 104 of 4 0.20Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland242 164 of 4 0.61Down
Larval midgut764 494 of 4 1.93Up
Larval tubule2369 634 of 4 6.00Up
Larval hindgut416 244 of 4 1.05None
Larval fat body2 10 of 4 0.00Down
Larval trachea148 154 of 4 0.38Down
Larval carcass353 1264 of 4 0.89None
S2 cells (growing)3 10 of 4 0.01Down
Whole fly395 134 of 4

Looking for CG11128-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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