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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11129-RA through 18771 annotations produced 1 hits



yolk protein (Yp3):

Annotation Number : CG11129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004047
Gbrowse : chrX:13653577-13655209 (+) // 100.0 //
Probeset : 1631419_at
Accessions : protein= NP_511148;, nucleotide= NM_078593;
Pathway : 0005576 // extracellular region // inferred from mutant phenotype /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0004047.
BDGP gene expression has embryonic in situ data for Yp3: 12 pix of staining in 2 body parts.
Homophila reports that CG11129 is a close match (5e-11) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG11129 interacts with CG15576 CG31211 CG4059 CG5134 CG5709 CG6945 CG9014 .
VDRC has 2 RNAi stocks for FBgn0004047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1844 ± 134 of 4 0.40Down
Head5473 ± 2044 of 4 1.30Up
Eye7785 ± 5924 of 4 1.80Up
Thoracicoabdominal ganglion2463 ± 2144 of 4 0.60Down
Salivary gland458 ± 1744 of 4 0.11Down
Crop1620 ± 1814 of 4 0.40Down
Midgut207 ± 324 of 4 0.00Down
Tubule1153 ± 6532 of 4 0.30Down
Hindgut3800 ± 614 of 4 0.90None
Heart7847 ± 7304 of 4 1.81Up
Fat body4251 ± 7604 of 4 0.98None
Ovary1676 ± 1874 of 4 0.40Down
Testis6 ± 10 of 4 0.00Down
Male accessory glands18 ± 60 of 4 0.00Down
Virgin spermatheca4415 ± 1604 of 4 1.02None
Mated spermatheca4825 ± 3794 of 4 1.11None
Adult carcass7225 ± 5384 of 4 1.70Up
Larval CNS8 ± 30 of 4 0.00Down
Larval Salivary gland25 ± 111 of 4 0.01Down
Larval midgut43 ± 182 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut12 ± 30 of 4 0.00Down
Larval fat body365 ± 2013 of 4 0.10Down
Larval trachea389 ± 7631 of 4 0.09Down
Larval carcass17 ± 50 of 4 0.00Down
S2 cells (growing)5 ± 00 of 4 0.00Down
Whole fly4328 ± 3824 of 4

Looking for CG11129-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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