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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11139-RA through 18771 annotations produced 1 hits



p47 (p47):

Annotation Number : CG11139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033179
Gbrowse : chr2R:3352519-3354236 (-) // 100.0 //
Probeset : 1641350_at
Accessions : protein= NP_610284;, nucleotide= NM_136440;
FlyMine data for FBgn0033179.
BDGP gene expression has embryonic in situ data for p47: 7 pix of staining in 17 body parts.
BioGrid reports that CG11139 interacts with CG3924 CG8155 .
VDRC has 3 RNAi stocks for FBgn0033179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 104 of 4 0.60Down
Head330 ± 104 of 4 0.80None
Eye522 ± 194 of 4 1.31Up
Thoracicoabdominal ganglion263 ± 104 of 4 0.70Down
Salivary gland261 ± 74 of 4 0.65Down
Crop357 ± 144 of 4 0.90None
Midgut226 ± 64 of 4 0.60Down
Tubule195 ± 94 of 4 0.50Down
Hindgut248 ± 24 of 4 0.60Down
Heart656 ± 354 of 4 1.64Up
Fat body763 ± 454 of 4 1.91Up
Ovary513 ± 44 of 4 1.30Up
Testis626 ± 164 of 4 1.60Up
Male accessory glands378 ± 64 of 4 0.90None
Virgin spermatheca273 ± 104 of 4 0.68Down
Mated spermatheca262 ± 144 of 4 0.66Down
Adult carcass577 ± 334 of 4 1.40Up
Larval CNS509 ± 184 of 4 1.27Up
Larval Salivary gland508 ± 164 of 4 1.27Up
Larval midgut349 ± 344 of 4 0.87None
Larval tubule562 ± 174 of 4 1.40Up
Larval hindgut459 ± 194 of 4 1.15None
Larval fat body489 ± 114 of 4 1.20Up
Larval trachea409 ± 384 of 4 1.02None
Larval carcass602 ± 384 of 4 1.51Up
S2 cells (growing)450 ± 214 of 4 1.13None
Whole fly400 ± 284 of 4

Looking for CG11139-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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